PGEToolbox: A Matlab Toolbox for Population Genetics and Evolution

PGEToolbox: A Matlab toolbox for population genetics and evolution.

Assessing genetic diversity within populations is vital for understanding the nature of evolutionary processes at the molecular level. PGEToolbox is a Matlab-based open-sourced software package for data analysis in population genetics. The main features of this software are as follows: 1) capability for handling both DNA sequence polymorphisms and single nucleotide polymorphisms (SNPs), which i...

Population Genetics and Evolution

These lecture notes introduce key concepts of mathematical population genetics within the most elementary setting and describe a few recent applications to microbial evolution experiments. Pointers to the literature for further reading are provided, and some of the derivations are left as exercises for the reader.

MATLAB toolbox for functional connectivity

The term "functional connectivity" is used to denote correlations in activation among spatially-distinct brain regions, either in a resting state or when processing external stimuli. Functional connectivity has been extensively evaluated with several functional neuroimaging methods, particularly PET and fMRI. Yet these relationships have been quantified using very different measures and the ext...

EDT: ElastoDynamics Toolbox for MATLAB

A Periodic Systems Toolbox for Matlab

The recently developed PERIODIC SYSTEMS Toolbox for MATLAB is described. The basic approach to develop this toolbox was to exploit the powerful object manipulation features of MATLAB via flexible and functionally rich high level m-functions, while simultaneously enforcing highly efficient and numerically sound computations via the mex-function technology of MATLAB to solve critical numerical pr...